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Update app.py
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app.py
CHANGED
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@@ -112,35 +112,35 @@ opt = st.sidebar.radio("Select a PubMed Corpus", options=('Breast Cancer corpus'
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# database_name = "Neuroblastoma"
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if opt == "Breast Cancer corpus":
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model_used = ("breast_cancer_pubmed_model")
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num_abstracts =
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database_name = "Breast_cancer"
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if opt == "Lung Cancer corpus":
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model_used = ("lung_cancer_pubmed_model")
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num_abstracts =
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database_name = "Lung_cancer"
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if opt == "Colorectal Cancer corpus":
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model_used = ("colorectal_cancer_pubmed_model")
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num_abstracts =
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database_name = "Colorectal_cancer"
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if opt == "Prostate Cancer corpus":
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model_used = ("prostate_cancer_pubmed_model")
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num_abstracts =
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database_name = "Prostate_cancer"
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if opt == "Skin Cancer corpus":
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model_used = ("skin_cancer_pubmed_model")
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num_abstracts =
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database_name = "Skin_cancer"
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if opt == "Lymphoma Cancer corpus":
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model_used = ("lymphoma_cancer_pubmed_model")
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num_abstracts =
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database_name = "Lymphoma_cancer"
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if opt == "Urinary Cancer corpus":
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model_used = ("urinary_cancer_pubmed_model")
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num_abstracts =
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database_name = "Urinary_cancer"
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if opt == "Kidney Cancer corpus":
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model_used = ("kidney_cancer_pubmed_model")
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num_abstracts =
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database_name = "Kidney_cancer"
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@@ -470,6 +470,7 @@ if query:
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"Human gene designation and database provided by HUGO Gene Nomenclature Committee (HGNC): https://www.genenames.org/")
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st.caption("Gene designation add in exceptions [p21, p53, her2, her3]")
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st.caption("Gene information provided by GeneCards: https://www.genecards.org//")
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csv = df1.head(value_gene).to_csv().encode('utf-8')
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st.download_button(label=f"download top {value_gene} genes (csv)", data=csv,
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# database_name = "Neuroblastoma"
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if opt == "Breast Cancer corpus":
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model_used = ("breast_cancer_pubmed_model")
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num_abstracts = 204414
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database_name = "Breast_cancer"
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if opt == "Lung Cancer corpus":
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model_used = ("lung_cancer_pubmed_model")
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num_abstracts = 143916
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database_name = "Lung_cancer"
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if opt == "Colorectal Cancer corpus":
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model_used = ("colorectal_cancer_pubmed_model")
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num_abstracts = 138679
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database_name = "Colorectal_cancer"
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if opt == "Prostate Cancer corpus":
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model_used = ("prostate_cancer_pubmed_model")
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num_abstracts = 89791
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database_name = "Prostate_cancer"
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if opt == "Skin Cancer corpus":
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model_used = ("skin_cancer_pubmed_model")
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num_abstracts = 176587
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database_name = "Skin_cancer"
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if opt == "Lymphoma Cancer corpus":
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model_used = ("lymphoma_cancer_pubmed_model")
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num_abstracts = 102603
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database_name = "Lymphoma_cancer"
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if opt == "Urinary Cancer corpus":
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model_used = ("urinary_cancer_pubmed_model")
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num_abstracts = 60876
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database_name = "Urinary_cancer"
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if opt == "Kidney Cancer corpus":
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model_used = ("kidney_cancer_pubmed_model")
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num_abstracts = 39016
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database_name = "Kidney_cancer"
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"Human gene designation and database provided by HUGO Gene Nomenclature Committee (HGNC): https://www.genenames.org/")
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st.caption("Gene designation add in exceptions [p21, p53, her2, her3]")
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st.caption("Gene information provided by GeneCards: https://www.genecards.org//")
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st.caption("In some cases genes may represent abbreviations of words and not genes, use pubmed link to confirm output is a gene")
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csv = df1.head(value_gene).to_csv().encode('utf-8')
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st.download_button(label=f"download top {value_gene} genes (csv)", data=csv,
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